getTFBindingSites: Get MR TF binding regions infered by ELMER

In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Description

Saves a bed file with the unmethylated probes (+-250bp) regions that was infered to be bound by a given TF

Usage

getTFBindingSites(
  tf = NULL,
  results.dir = NULL,
  genome = "hg38",
  met.platform = "450K"
)

Arguments

tf	TF name
results.dir	path to the directory with the results (i.e. analysis/unsupervised/definition-Primary.solid.Tumor_vs_Solid.Tissue.Normal/hypo/)
genome	Human genome (hg38, hg19)
met.platform	DNA Methylation Array platform (EPIC, 450K)

Examples

## Not run: 
  getTFBindingSites("HNF1A",
                    results.dir = "analysis/unsupervised/group-Tumor_vs_Normal/hypo/")

## End(Not run)

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.