getSymbol: getSymbol to report gene symbol from id
In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Description Usage Arguments Value Examples

View source: R/methodAccess.R

getSymbol to report gene symbol from id

1	getSymbol(data, geneID)

`data`	A multiAssayExperiment with DNA methylation and Gene Expression data. See `createMAE` function.
`geneID`	A character which is the ensembl_gene_id

The gene symbol for input genes.

1 2	data <- ELMER:::getdata("elmer.data.example") getSymbol(data, geneID="ENSG00000143067")

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.

ELMER index

11 - ELMER: Use case 2 - Introduction: Input data 3.1 - Data input - Creating MAE object 3.2 - Identifying differentially methylated probes 3.3 - Identifying putative probe-gene pairs 3.4 - Motif enrichment analysis on the selected probes 3.5 - Identifying regulatory TFs 3.6 - TCGA.pipe: Running ELMER for TCGA data in a compact way 4.1 - Scatter plots 4.2 - Schematic plots 4.3 - Motif enrichment plots 4.4 - Regulatory TF plots 4.5 - Heatmap plots 5 - Integrative analysis workshop with TCGAbiolinks and ELMER - Analysis GUI ELMER v.2: An R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Tweet to @rdrrHQ

GitHub issue tracker

ian@mutexlabs.com