update_fluxes_state: Update the fluxes bounds given the metabolites concentrations

In CoRegFlux: CoRegFlux

Description

Updates the fluxes values by performing flux balance analysis, it is necessary to indicate the indexes of the extraneous metabolites and the biomass reaction. It performs an fba step and selects the given fluxes

Usage

update_fluxes_state(model, met_fluxes_indexes, biomass_flux_index)

Arguments

model	An object of class modelOrg, the metabolic model.
met_fluxes_indexes	index of the fluxes corresponding to uptake of extrogenous metabolites
biomass_flux_index	index of the flux corresponding to the biomass reaction.

Value

a list of elements: fluxes : array containing the fluxes values for the fba solution. biomass_yield: flux value for the corresponding biomass reaction met_fluxes: fluxes corresponding to the uptake reactions of the extraneous metabolites obj: value of the objective function obtained by the flux balance analysis model.

CoRegFlux documentation built on Nov. 8, 2020, 5:21 p.m.