Description Usage Arguments Value
View source: R/CoregfluxFunctions.R
Train a linear model and predict the gene expression from an experiment influence
1 2 | train_continuous_model(train_expression, train_influence, minTarget = 10,
experiment_influence, network)
|
train_expression |
Gene expression of the training data set, not necessary if train_influence is supplied. Should be numerical matrix corresponding to the gene expression. Rownames should contain gene names/ids while samples should be in columns. |
train_influence |
Regulator influence scores of the train data set. |
minTarget |
The minimum number of targets for a regulator to be considered for actvity prediction when computing the influence. Default set to 10 |
experiment_influence |
Regulator influence scores for the condition of interest as a named vector with the TF as names. |
network |
CoRegNet object to be interrogated for building the linear models |
The predicted gene expression levels compute from the linear model and the experiment influence
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.