split_cdb: Split into a list of 'ContigCellDB()' by named fields

In CellaRepertorium: Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)

Description

Split into a list of ContigCellDB() by named fields

Usage

split_cdb(ccdb, fields, tbl = "contig_tbl", drop = FALSE, equalize = TRUE)

Arguments

ccdb	ContigCellDB()
fields	character naming fields in tbl
tbl	one of contig_tbl, cell_tbl or cluster_tbl
drop	logical indicating if levels that do not occur should be dropped (if f is a factor or a list).
equalize	logical. Should the contig, cells and clusters be equalized by taking the intersection of their common keys?

Value

list of ContigCellDB

Examples

data(ccdb_ex)
splat = split_cdb(ccdb_ex, 'chain', 'contig_tbl')
stopifnot(all(splat$TRA$contig_tbl$chain == 'TRA'))
stopifnot(all(splat$TRB$contig_tbl$chain == 'TRB'))

CellaRepertorium documentation built on Nov. 8, 2020, 7:48 p.m.