guess_celltype: Guess the cell type of a contig from the chain ID
In CellaRepertorium: Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)
Description
Usage
Arguments
Value
See Also
Examples
Description
This function is likely dependent on annotations from 10X and
may change or break
as their pipeline changes.
Usage
1
guess_celltype(chain)
Arguments
chain
character which will be parsed to try to infer celltype
Value
contig table with celltype column
See Also
Examples
1
2
data(ccdb_ex)
table(guess_celltype(ccdb_ex$contig_tbl$chain))
CellaRepertorium documentation built on Nov. 8, 2020, 7:48 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
Description
This function is likely dependent on annotations from 10X and may change or break as their pipeline changes.
Usage
1 | guess_celltype(chain)
|
Arguments
chain |
|
Value
contig table with celltype column
See Also
Examples
1 2 | data(ccdb_ex)
table(guess_celltype(ccdb_ex$contig_tbl$chain))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.