CellaRepertorium
Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)

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crosstab_by_celltype: Count contig UMIs by celltype

crosstab_by_celltype: Count contig UMIs by celltype
In CellaRepertorium: Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)

Description Usage Arguments Value See Also Examples

View source: R/auxiliary.R

Description

Count contig UMIs by celltype

Usage

1
crosstab_by_celltype(ccdb)

Arguments

ccdb

A ContigCellDB object

Value

a table, keyed by cell_pk counting UMIs per celltype

See Also

guess_celltype()

Examples

1
2
3
4
data(ccdb_ex)
nrow(ccdb_ex$cell_tbl)
total_umi = crosstab_by_celltype(ccdb_ex)
nrow(total_umi)

CellaRepertorium documentation built on Nov. 8, 2020, 7:48 p.m.

Related to crosstab_by_celltype in CellaRepertorium...

CellaRepertorium index
README.md An Introduction to CellaRepertorium Clustering and differential usage of repertoire CDR3 sequences Combining Repertoire with Expression with SingleCellExperiment Quality control and Exploration of UMI-based repertoire data

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