oncoPrintISB: interactive interface to ComplexHeatmap oncoPrint with inputs...
In BiocOncoTK: Bioconductor components for general cancer genomics
Description
Usage
Arguments
Value
Note
Examples
Description
interactive interface to ComplexHeatmap oncoPrint with inputs from ISB Cancer Genomics Cloud BigQuery back end
Usage
1
oncoPrintISB(bq)
Arguments
bq
an instance of BigQueryConnection-class authenticated for ISB Cancer Genomics Cloud access
Value
only used for side effect of running shiny app
Note
This function will start a shiny app and will generate queries to
Google BigQuery tables representing TCGA.
Examples
1
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if (interactive()) {
bcode = Sys.getenv("CGC_BILLING")
if (nchar(bcode)>0) {
con <- DBI::dbConnect(bigrquery::bigquery(), project = "isb-cgc",
dataset = "tcga_201607_beta", billing = bcode)
oncoPrintISB(con)
}
}
BiocOncoTK documentation built on Nov. 8, 2020, 6:03 p.m.
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Description Usage Arguments Value Note Examples
Description
interactive interface to ComplexHeatmap oncoPrint with inputs from ISB Cancer Genomics Cloud BigQuery back end
Usage
1 | oncoPrintISB(bq)
|
Arguments
bq |
an instance of |
Value
only used for side effect of running shiny app
Note
This function will start a shiny app and will generate queries to Google BigQuery tables representing TCGA.
Examples
1 2 3 4 5 6 7 8 | if (interactive()) {
bcode = Sys.getenv("CGC_BILLING")
if (nchar(bcode)>0) {
con <- DBI::dbConnect(bigrquery::bigquery(), project = "isb-cgc",
dataset = "tcga_201607_beta", billing = bcode)
oncoPrintISB(con)
}
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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