add_sym: add symbols in rowData to a SummarizedExperiment that has...
In BiocOncoTK: Bioconductor components for general cancer genomics
Description
Usage
Arguments
Note
Examples
Description
add symbols in rowData to a SummarizedExperiment that has Entrez IDs for rownames
Usage
1
add_sym(x)
Arguments
x
SummarizedExperiment instance
Note
Will fail if 'symbol' is a column of rowData(x)
Examples
1
2
3
4
5
6
if (interactive()) {
bq = pancan_BQ()
rnse = try(buildPancanSE(bq, assay="RNASeqv2"))
if (inherits(rnse, "try-error")) stop("probably need CGC_BILLING set in environment or with pancan_BQ")
add_sym(rnse)
}
BiocOncoTK documentation built on Nov. 8, 2020, 6:03 p.m.
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Description Usage Arguments Note Examples
Description
add symbols in rowData to a SummarizedExperiment that has Entrez IDs for rownames
Usage
1 | add_sym(x)
|
Arguments
x |
SummarizedExperiment instance |
Note
Will fail if 'symbol' is a column of rowData(x)
Examples
1 2 3 4 5 6 | if (interactive()) {
bq = pancan_BQ()
rnse = try(buildPancanSE(bq, assay="RNASeqv2"))
if (inherits(rnse, "try-error")) stop("probably need CGC_BILLING set in environment or with pancan_BQ")
add_sym(rnse)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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