API for AlpsNMR
Automated spectraL Processing System for NMR
| Global functions | |
|---|---|
| AUC_model | Man page |
| AlpsNMR | Man page |
| AlpsNMR-package | Man page |
| HMDB_blood | Man page |
| HMDB_cell | Man page |
| HMDB_urine | Man page |
| MUVR_model_plot | Man page |
| Parameters_blood | Man page |
| Parameters_cell | Man page |
| Parameters_urine | Man page |
| Peak_detection | Man page |
| Pipe_normalization | Man page |
| Pipelines | Man page |
| ROI_blood | Man page |
| ROI_cell | Man page |
| ROI_urine | Man page |
| SummarizedExperiment_to_nmr_data_1r | Man page Source code |
| SummarizedExperiment_to_nmr_dataset_peak_table | Man page Source code |
| [.nmr_dataset | Man page |
| [.nmr_dataset_1D | Man page |
| [.nmr_dataset_peak_table | Man page |
| `[.nmr_dataset_1D` | Source code |
| `[.nmr_dataset_peak_table` | Source code |
| `[.nmr_dataset` | Source code |
| batman_get_full_filename | Source code |
| bp_VIP_analysis | Man page Source code |
| bp_kfold_VIP_analysis | Man page Source code |
| bruker_merge_meta_pdata | Source code |
| callback_outer_cv_auroc_vip | Source code |
| callback_plsda_auroc_vip | Source code |
| computes_peak_width_ppm | Man page Source code |
| confusion_matrix | Man page Source code |
| convert_field | Source code |
| create_df_from_jdx_sample | Source code |
| decimate_axis | Source code |
| do_cv | Source code |
| file_lister | Man page Source code |
| files_to_rDolphin | Man page |
| filter.nmr_dataset_family | Man page Source code |
| format.nmr_dataset | Man page Source code |
| format.nmr_dataset_1D | Man page Source code |
| format.nmr_dataset_peak_table | Man page Source code |
| fun_choose_best_ncomp_auc_threshold | Source code |
| get_integration_with_metada | Man page |
| get_integration_with_metadata | Man page |
| guess_shape_and_submatrix_shape | Source code |
| hmdb | Man page |
| infer_dim_pulse_nuclei | Source code |
| interpolate_1d | Source code |
| is.nmr_dataset | Man page Source code |
| is.nmr_dataset_1D | Man page Source code |
| is.nmr_dataset_peak_table | Man page Source code |
| list_of_lists_to_tibble | Source code |
| load_and_save_functions | Man page |
| model_VIP | Man page Source code |
| models_stability_plot_bootstrap | Man page |
| models_stability_plot_plsda | Man page |
| new_nmr_data_analysis_method | Man page Source code |
| new_nmr_dataset | Man page Source code |
| new_nmr_dataset_1D | Man page Source code |
| new_nmr_dataset_peak_table | Man page Source code |
| nmr_align | Man page Source code |
| nmr_align_find_ref | Man page Source code |
| nmr_baseline_removal | Man page Source code |
| nmr_baseline_threshold | Man page Source code |
| nmr_batman | Man page |
| nmr_batman_export_dataset | Man page Source code |
| nmr_batman_metabolites_list | Man page Source code |
| nmr_batman_multi_data_user | Man page Source code |
| nmr_batman_multi_data_user_hmdb | Man page Source code |
| nmr_batman_options | Man page Source code |
| nmr_batman_write_options | Man page Source code |
| nmr_data | Man page Source code |
| nmr_data.nmr_dataset_1D | Source code |
| nmr_data.nmr_dataset_peak_table | Source code |
| nmr_data<- | Man page |
| nmr_data<-.nmr_dataset_1D | Man page |
| nmr_data_1r_to_SummarizedExperiment | Man page Source code |
| nmr_data_analysis | Man page Source code |
| nmr_data_analysis_method | Man page |
| nmr_dataset | Man page |
| nmr_dataset_1D | Man page |
| nmr_dataset_family | Man page |
| nmr_dataset_load | Man page Source code |
| nmr_dataset_peak_table | Man page |
| nmr_dataset_peak_table_to_SummarizedExperiment | Man page Source code |
| nmr_dataset_save | Man page Source code |
| nmr_detect_peaks | Man page Source code |
| nmr_detect_peaks_plot | Man page Source code |
| nmr_detect_peaks_tune_snr | Man page Source code |
| nmr_diagnose | Man page Source code |
| nmr_diagnose-defunct | Man page |
| nmr_exclude_region | Man page Source code |
| nmr_exclude_region.nmr_dataset_1D | Man page Source code |
| nmr_export_data_1r | Man page Source code |
| nmr_get_long_df | Source code |
| nmr_identify_regions_blood | Man page Source code |
| nmr_identify_regions_cell | Man page Source code |
| nmr_identify_regions_urine | Man page Source code |
| nmr_integrate_peak_positions | Man page |
| nmr_integrate_regions | Man page Source code |
| nmr_integrate_regions.nmr_dataset_1D | Man page Source code |
| nmr_interpolate_1D | Man page Source code |
| nmr_interpolate_1D.nmr_dataset | Man page Source code |
| nmr_meta_add | Man page Source code |
| nmr_meta_add_tidy_excel | Man page Source code |
| nmr_meta_export | Man page |
| nmr_meta_get | Man page Source code |
| nmr_meta_get_column | Man page Source code |
| nmr_normalize | Man page Source code |
| nmr_normalize_add_extra_info | Source code |
| nmr_normalize_extra_info | Man page Source code |
| nmr_pca_build_model | Man page Source code |
| nmr_pca_build_model.nmr_dataset_1D | Man page Source code |
| nmr_pca_loadingplot | Man page Source code |
| nmr_pca_outliers | Man page Source code |
| nmr_pca_outliers_filter | Man page Source code |
| nmr_pca_outliers_plot | Man page Source code |
| nmr_pca_outliers_robust | Man page Source code |
| nmr_pca_plot_variance | Man page Source code |
| nmr_pca_plots | Man page |
| nmr_pca_scoreplot | Man page Source code |
| nmr_ppm_resolution | Man page Source code |
| nmr_ppm_resolution.nmr_dataset | Man page Source code |
| nmr_ppm_resolution.nmr_dataset_1D | Man page Source code |
| nmr_read_bruker_fid | Man page Source code |
| nmr_read_samples | Man page Source code |
| nmr_read_samples_bruker | Source code |
| nmr_read_samples_dir | Man page Source code |
| nmr_read_samples_dir_internal | Source code |
| nmr_read_samples_internal | Source code |
| nmr_read_samples_jdx | Source code |
| nmr_zip_bruker_samples | Man page Source code |
| norm_pqn | Source code |
| p_value_perm | Man page |
| parse_title_file | Source code |
| peakList_to_dataframe | Source code |
| peak_data_to_peakList | Source code |
| permutation_test_model | Man page |
| permutation_test_plot | Man page |
| pipe_add_metadata | Man page Source code |
| pipe_exclude_regions | Man page Source code |
| pipe_filter_samples | Man page Source code |
| pipe_interpolate_1D | Man page Source code |
| pipe_load_samples | Man page Source code |
| pipe_normalization | Man page Source code |
| pipe_outlier_detection | Man page Source code |
| pipe_pakdet_align | Man page |
| pipe_peak_integration | Man page Source code |
| pipe_peakdet_align | Man page Source code |
| plot.nmr_dataset_1D | Man page Source code |
| plot_bootstrap_multimodel | Man page Source code |
| plot_interactive | Man page Source code |
| plot_plsda_multimodel | Man page Source code |
| plot_plsda_samples | Man page Source code |
| plot_vip_scores | Man page Source code |
| plot_webgl | Man page Source code |
| plsda_auroc | Source code |
| plsda_auroc_vip_compare | Man page Source code |
| plsda_auroc_vip_method | Man page Source code |
| plsda_build | Source code |
| plsda_vip | Source code |
| ppm_VIP_vector | Man page Source code |
| ppm_resolution | Man page |
| print.nmr_dataset | Man page Source code |
| print.nmr_dataset_1D | Man page Source code |
| print.nmr_dataset_peak_table | Man page Source code |
| process_block | Source code |
| random_subsampling | Man page Source code |
| rdCV_PLS_RF | Man page Source code |
| rdCV_PLS_RF_ML | Man page |
| read_acqus_file | Source code |
| read_bin_data | Source code |
| read_bruker_metadata | Source code |
| read_bruker_param | Source code |
| read_bruker_pdata | Source code |
| read_bruker_sample | Man page Source code |
| read_jdx | Source code |
| read_levels | Source code |
| read_orig_file | Source code |
| read_pdata_title_file | Source code |
| read_procs_file | Source code |
| regions_from_peak_table | Man page Source code |
| rough_baseline | Source code |
| save_files_to_rDolphin | Man page |
| save_profiling_output | Man page |
| show_progress_bar | Source code |
| split_build_perform | Source code |
| split_double_cv | Source code |
| strip_comments | Source code |
| tibble_lists_columns_to_vector_columns | Source code |
| to_ChemoSpec | Man page Source code |
| validate_nmr_dataset | Man page Source code |
| validate_nmr_dataset_1D | Man page Source code |
| validate_nmr_dataset_family | Man page Source code |
| validate_nmr_dataset_peak_table | Man page Source code |
| verify_axisn | Source code |
| verify_dimensionality | Source code |
