bgCorrQn: Background correction and quantile normalization

In waveTiling: Wavelet-Based Models for Tiling Array Transcriptome Analysis

Description

Function to perform background correction and quantile normalization of tiling arrays

Usage

bgCorrQn(object, useMapFilter=NULL)

Arguments

object	object of class WaveTilingFeatureSet
useMapFilter	NULL or object of class mapFilterProbe indicating the probes to use for background correction and quantile normalization

Value

object of class WaveTilingFeatureSet containing the background-corrected and quantile-normalized intensity signals

Author(s)

Kristof De Beuf <[e-mail]>

Examples

## Not run: 
  data(leafdev)
  leafdev <- as(leafdev,"WaveTilingFeatureSet")
  data(leafdevMapAndFilterTAIR9)
  leafdevBQ <- bgCorrQn(leafdev,useMapFilter=leafdevMapAndFilterTAIR9)

## End(Not run)

waveTiling documentation built on May 2, 2019, 4:46 p.m.