sync.gds: Synchronize a GDS file

In zhengxwen/gdsfmt: R Interface to CoreArray Genomic Data Structure (GDS) Files

Synchronize a GDS file

Description

Write the data cached in memory to disk.

Usage

sync.gds(gdsfile)

Arguments

gdsfile

An object of class gds.class, a GDS file

Details

For better performance, Data in a GDS file are usually cached in memory. Keep in mind that the new file may not actually be written to disk, until closefn.gds or sync.gds is called. Anyway, when R shuts down, all GDS files created or opened would be automatically closed.

Value

None.

Author(s)

Xiuwen Zheng

See Also

createfn.gds, openfn.gds

Examples

options(gds.verbose=TRUE)

# cteate a GDS file
f <- createfn.gds("test.gds")

node <- add.gdsn(f, "int", val=1:10000)
put.attr.gdsn(node, "missing.value", 10000)
f

sync.gds(f)

get.attr.gdsn(node)

# close the GDS file
closefn.gds(f)


# delete the temporary file
unlink("test.gds", force=TRUE)

zhengxwen/gdsfmt documentation built on Sept. 27, 2024, 10:08 a.m.