physeq-methods: Retrieve a phyloseq-class object from object.

In zellerlab/siamcat: Statistical Inference of Associations between Microbial Communities And host phenoTypes

Retrieve a phyloseq-class object from object.

Description

Retrieve a phyloseq-class object from object.

Usage

physeq(siamcat, verbose=1)

## S4 method for signature 'ANY'
physeq(siamcat, verbose = 1)

## S4 method for signature 'phyloseq'
physeq(siamcat)

Arguments

siamcat	(Required). An instance of siamcat-class that contains a label or instance of phyloseq-class.
verbose	If the slot is empty, should a message be printed? values can be either 0 (no output) or 1 (print message)

Value

The phyloseq-class object or NULL.

Examples

data(siamcat_example)
physeq(siamcat_example)

zellerlab/siamcat documentation built on Feb. 1, 2024, 2:21 a.m.