miRNA_MatureToPrecursor: Convert the mature miRNAs to the corresponding precursors

In xtsvm/miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Description

This function converts the mature miRNAs to the corresponding precursors in the specified miRBase version.

Usage

miRNA_MatureToPrecursor(miRNANames, version = NULL)

Arguments

miRNANames

A character vector representing the miRNA names.

version

The default is NULL representing the most possible latest version of the input miRNA Names will be checked automatically. Otherwise, a character value representing the version corresponding the input miRNA Names. Users can apply the function getAllVersionInfo() to get the available miRNA version names. The optional values are in below: "v6","v7_1","v8","v8_1","v8_2","v9","v9_1","v9_2","v10","v10_1","v11","v12","v13","v14", "v15","v16","v17","v18","v19","v20","v21".

Value

A data frame(nx2). The number of rows equal to the input miRNA Names. The two columns are defined as below:

• OriginalName : The input miRNA Names.
  

• Precursor : The corresponding precursors of the mature miRNAs.
  

Author(s)

Xu, Taosheng [e-mail]

Examples

data(miRNATest)
miRNANames=miRNATest$miRNA_Name
result=miRNA_MatureToPrecursor(miRNANames)

xtsvm/miRBaseConverter documentation built on May 20, 2019, 5:08 p.m.