checkMiRNAFamliy: Check the miRNA family

In xtsvm/miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Description

This function checks the miRNA family for a list of miRNA Names.

Usage

checkMiRNAFamliy(Accessions)

Arguments

Accessions

A character vector representing the miRNA Accessions in miRBase.

Value

A data frame with four columns. The number of rows equal to the input Accessions. The four columns are defined as below:

• Accession : The input miRNA accessions.
  

• miRNAName_v21 : The miRNA names (version 21) corresponding to the Accession.
  

• FamliyAccession : The accession of the family .
  

• Family : The family name.
  

Author(s)

Xu, Taosheng [e-mail]

Examples

data(miRNATest)
## The input is miRNA Accessions
Accessions=miRNATest$Accession
Family_Info1=checkMiRNAFamliy(Accessions)

##The input is miRNA names
miRNANames=miRNATest$miRNA_Name
version=checkMiRNAVersion(miRNANames,verbose = TRUE)
result=miRNA_NameToAccession(miRNANames,version=version)
Accessions=result$Accession
Family_Info2=checkMiRNAFamliy(Accessions)

xtsvm/miRBaseConverter documentation built on May 20, 2019, 5:08 p.m.