plotTICs: plotTICs

In xia-lab/OptiLCMS: Optimized LC-MS Spectra Processing

plotTICs

Description

plotTICs is used to plot the TIC of all files

Usage

plotTICs(mSet = NULL, imgName, format = "png", dpi = 72, width = NA)

Arguments

mSet	mSet Object, should be processed by ImportMSData.
imgName	Character, to name the imgName for the TIC plotting.
format	Character, to give the format of BPI figures ploted. Can be "jpeg", "png", "pdf", "svg", "tiff" or "ps". Default is "png". (only works for web version)
dpi	Numeric, to define the dpi of the figures. Default is 72. (only works for web version)
width	Numeric, width of the figure (default is NA, usually set it as 6~12)

Value

will return a figure of TICs

Examples

newPath <- dir(system.file("mzData", package = "mtbls2"), 
full.names = TRUE, recursive = TRUE)[c(10:12)]
data(mSet)
mSet <- updateRawSpectraPath(mSet, newPath)
plotTICs(mSet)

xia-lab/OptiLCMS documentation built on Nov. 6, 2024, 11:01 a.m.