This: Set and get cell barcode information for a 'Fragment' object

In wzthu/ATACFlow: An Easy-to-use Systematic pipeline for ATACseq data analysis

Set and get cell barcode information for a Fragment object

Description

Set and get cell barcode information for a Fragment object

Usage

## S3 method for class 'Fragment'
Cells(x, ...)

Arguments

x	A Fragment object
...	Arguments passed to other methods

Value

cell barcode information

Functions

• Cells.Fragment: returns the names of cells in the object that are contained in the fragment file. These cell barcodes may not match the barcodes present in the fragment file. The Fragment object contains an internal mapping of the cell names in the ChromatinAssay object to the cell names in the fragment file, so that cell names can be changed in the assay without needing to change the cell names on disk.

  To access the cell names that are stored in the fragment file itself, use GetFragmentData(object = x, name = "cells").

wzthu/ATACFlow documentation built on Aug. 9, 2022, 2:24 a.m.