Fragment-class: The Fragment class

In wzthu/ATACFlow: An Easy-to-use Systematic pipeline for ATACseq data analysis

The Fragment class

Description

The Fragment class is designed to hold information needed for working with fragment files. This class is from Signac.

Slots

path

Path to the fragment file on disk. See https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/output/fragments

hash

A vector of two md5sums: first element is the md5sum of the fragment file, the second element is the md5sum of the index.

cells

A named vector of cells where each element is the cell barcode as it appears in the fragment file.

Examples

frag <- new("Fragment", path = "file path", hash = "file hash")

wzthu/ATACFlow documentation built on Aug. 9, 2022, 2:24 a.m.