MultiRegionCutMatrix: MultiRegionCutMatrix

In wzthu/ATACFlow: An Easy-to-use Systematic pipeline for ATACseq data analysis

MultiRegionCutMatrix

Description

Generate cut matrix for many regions

Usage

MultiRegionCutMatrix(
  object,
  regions,
  group.by = NULL,
  fragments = NULL,
  assay = NULL,
  cells = NULL,
  verbose = FALSE
)

Arguments

object	A Fragment object
regions	A set of GRanges
group.by	Name of grouping variable to use
fragments	A list of Fragment objects
assay	Name of the assay to use
cells	Vector of cells to include
verbose	Display messages

Details

Run CutMatrix on multiple regions and add them together. Assumes regions are pre-aligned.

wzthu/ATACFlow documentation built on Aug. 9, 2022, 2:24 a.m.