extrProtCTriad: Conjoint Triad Descriptor
In wind22zhu/BioMedR: Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Conjoint Triad Descriptor
Usage
1
Arguments
x
A character vector, as the input protein sequence.
Details
This function calculates the Conjoint Triad descriptor (Dim: 343).
Value
A length 343 named vector
Author(s)
Min-feng Zhu <wind2zhu@163.com>,
Nan Xiao <http://r2s.name>
References
J.W. Shen, J. Zhang, X.M. Luo, W.L. Zhu,
K.Q. Yu, K.X. Chen, Y.X. Li, H.L. Jiang.
Predicting Protein-protein Interactions Based Only on Sequences Information.
Proceedings of the National Academy of Sciences. 007, 104, 4337–4341.
Examples
1
2
x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtCTriad(x)
wind22zhu/BioMedR documentation built on Oct. 21, 2019, 12:51 p.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
Conjoint Triad Descriptor
Usage
1 |
Arguments
x |
A character vector, as the input protein sequence. |
Details
This function calculates the Conjoint Triad descriptor (Dim: 343).
Value
A length 343 named vector
Author(s)
Min-feng Zhu <wind2zhu@163.com>, Nan Xiao <http://r2s.name>
References
J.W. Shen, J. Zhang, X.M. Luo, W.L. Zhu, K.Q. Yu, K.X. Chen, Y.X. Li, H.L. Jiang. Predicting Protein-protein Interactions Based Only on Sequences Information. Proceedings of the National Academy of Sciences. 007, 104, 4337–4341.
Examples
1 2 | x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtCTriad(x)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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