expand_KEGG_edges: Get detailed KEGG mapping information for each relation...
In uc-bd2k/KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Description
Usage
Arguments
Value
Examples
Description
Extract relationship information from KGML object and re-map
based on normalized node information
Usage
1
expand_KEGG_edges(KGML_file, KEGG_mappings)
Arguments
KGML_file
An object of formal class KEGGPathway
KEGG_mappings
The data.frame object generated by the function
expand_KEGG_mappings
Value
A dataframe object with unique entry information for all edges
documented in the KEGG pathway.
Note that each row has a unique combination of values for
(entry1, entry2, entry1symbol, entry2symbol).
Examples
1
2
3
p53_KGML <- get_KGML("hsa04115")
p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML, FALSE)
p53_edges <- expand_KEGG_edges(p53_KGML, p53_KEGG_mappings)
uc-bd2k/KEGGlincs documentation built on May 3, 2019, 2:13 p.m.
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Description Usage Arguments Value Examples
Description
Extract relationship information from KGML object and re-map based on normalized node information
Usage
1 | expand_KEGG_edges(KGML_file, KEGG_mappings)
|
Arguments
KGML_file |
An object of formal class KEGGPathway |
KEGG_mappings |
The data.frame object generated by the function expand_KEGG_mappings |
Value
A dataframe object with unique entry information for all edges documented in the KEGG pathway. Note that each row has a unique combination of values for (entry1, entry2, entry1symbol, entry2symbol).
Examples
1 2 3 | p53_KGML <- get_KGML("hsa04115")
p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML, FALSE)
p53_edges <- expand_KEGG_edges(p53_KGML, p53_KEGG_mappings)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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