Man pages for uc-bd2k/KEGGlincs
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
| add_edge_data | Annotate KEGG edge mappings with user data |
| add_KEGG_drugs | Add edges from disease/drug tables |
| cyto_vis | Send graph to Cytoscape via CyREST |
| edge_mapping_info | Prepare edges for mapping |
| expand_KEGG_edges | Get detailed KEGG mapping information for each relation... |
| expand_KEGG_mappings | Get detailed KEGG mapping information for each map entity |
| generate_mappings | The 'boilerplate' for this package's desired graph style |
| get_drug_table | Import disease/drug tables from KEGG |
| get_fisher_info | Perform Fisher's Exact test for edges in pathway |
| get_graph_object | Generate graph object from nodes and edges |
| get_KGML | Download and parse KGML file |
| keggerize_edges | Add in edges to map documented in other pathways |
| KEGGlincs | KEGGlincs: an R package designed to explore the edges in KEGG... |
| KEGG_lincs | Combines all other package functions for one-step pathway... |
| KL_compare | Combines all other package functions for one-step cell line... |
| node_mapping_info | Prepare nodes for mapping |
| overlap_info | Get overlap information for pairs of gene knock-outs from... |
| path_genes_by_cell_type | See how many pathway gene knock-outs are available from data |
| refine_mappings | Refine pathway by cell type |
| tidy_edge | Tidy up pathway by combining edges inside of... |
| toCytoscape | cyREST utility functions |
