sort_domains: Sort one domain dataframe based on the other domain dataframe

In trvinh/test: PhyloProfile

Description

Sort domain dataframe of one protein (either seed or ortholog) based on the dataframe of the its paired protein, in order to bring the common domain feature in the same order which make it easy for comparing.

Usage

sort_domains(seed_df, ortho_df)

Arguments

seed_df	data of seed protein
ortho_df	data of ortholog protein

Value

sorted domain list (dataframe)

Author(s)

Vinh Tran [e-mail]

Examples

## Not run: 
# get domain data
domain_file <- system.file(
    "extdata", "domain_files/OG_1009.domains",
    package = "phyloprofile", mustWork = TRUE
)
domain_df <- parse_domain_input(seedID, domain_file, "file")
# get seed_df and ortho_df
sub_df <- domain_df[domain_df$seedID == "OG_1009#A.thaliana@3702@241736",]
ortho_df <- dplyr::filter(sub_df, orthoID == "A.thaliana@3702@241736")
seed_df <- dplyr::filter(sub_df, orthoID != "A.thaliana@3702@241736")
# sort
sort_domains(seed_df, ortho_df)

## End(Not run)

trvinh/test documentation built on May 9, 2019, 2:26 a.m.