cluster_data_dend: Create a dendrogram tree from the distance matrix
In trvinh/test: PhyloProfile

Description Usage Arguments Value Author(s) See Also Examples

Create a dendrogram tree from the distance matrix

1	cluster_data_dend(distance_matrix, cluster_method)

`distance_matrix`	calculated distance matrix
`cluster_method`	clustering method ("single", "complete", "average" for UPGMA, "mcquitty" for WPGMA, "median" for WPGMC, or "centroid" for UPGMC)

A dendrogram tree object

Vinh Tran tran@bio.uni-frankfurt.de

get_data_clustering, get_distance_matrix, hclust

data("full_processed_profile_large", package="phyloprofile")
data <- full_processed_profile_large
profile_type <- "binary"
profiles <- get_data_clustering(
    data, profile_type, var1_aggregate_by, var2_aggregate_by)
dist_method <- "mutual_information"
distance_matrix <- get_distance_matrix(profiles, dist_method)
cluster_method <- "complete"
cluster_data_dend(distance_matrix, cluster_method)