heatmap_plotting: Create profile heatmap plot

In trvinh/test: PhyloProfile

Description

Create profile heatmap plot

Usage

heatmap_plotting(data, plot_parameter)

Arguments

data

data for heatmap plot

plot_parameter

plot parameters (type of x-axis "taxa" or "genes"; names of 2 variables; colors for lowest and highest value of variable 1; colors for lowest and highest value of variable 2; color of co-orthologs; text sizes for x, y axis and legend; legend position "top", "bottom", "right", "left" or "none"; zoom ratio of the co-ortholog dots from -1 to 3; angle of x-axis from 0 to 90; show/hide separate line for reference taxon 1/0; enable/disable coloring gene categories TRUE/FALSE)

Value

A profile heatmap plot as ggplot object.

Author(s)

Vinh Tran [e-mail]

See Also

data_main_plot, data_customized_plot

Examples

data("full_processed_profile", package="phyloprofile")
plot_df <- data_main_plot(full_processed_profile)
plot_parameter <- list(
    "x_axis" = "taxa",
    "var1_id" = "FAS",
    "var2_id"  = "Traceability",
    "low_color_var1" =  "#FF8C00",
    "high_color_var1" = "#4682B4",
    "low_color_var2" = "#FFFFFF",
    "high_color_var2" = "#F0E68C",
    "para_color" = "#07D000",
    "x_size" = 8,
    "y_size" = 8,
    "legend_size" = 8,
    "main_legend" = "top",
    "dot_zoom" = 0,
    "x_angle" = 60,
    "guideline" = 0,
    "color_by_group" = FALSE
)

heatmap_plotting(plot_df, plot_parameter)

trvinh/test documentation built on May 9, 2019, 2:26 a.m.