get_taxonomy_matrix: Get taxonomy matrix

In trvinh/test: PhyloProfile

Description

Get full taxonomy matrix from "data/taxonomyMatrix.txt" or only a subset of matrix based on an input taxon list

Usage

get_taxonomy_matrix(subset_taxa_check, taxon_IDs)

Arguments

subset_taxa_check	subset taxonomy matrix based on input taxon IDs (TRUE/FALSE)
taxon_IDs	list of input taxon IDs

Value

Data frame contains the (subset of) taxonomy matrix

Author(s)

Vinh Tran [e-mail]

Examples

# get full pre-installed taxonomy matrix
get_taxonomy_matrix(FALSE, NULL)
# get taxonomy matrix for a list of taxon IDs
taxon_ids <- c("ncbi10020", "ncbi10090")
get_taxonomy_matrix(TRUE, taxon_ids)

trvinh/test documentation built on May 9, 2019, 2:26 a.m.