ampkTorPhyloProfile: Phylogenetic profiles of AMPK-TOR taxon set
In trvinh/PhyloProfileData: Data package for phylogenetic profile analysis using PhyloProfile tool
Description
Data frame contains the phylogenetic profiles of 147 proteins of the human
AMPK-TOR pathway across 83 species in the three domains of life. This data is
part of the published study https://doi.org/10.1093/jxb/erw211.
Usage
1
Format
A data frame with 5 columns and 6535 rows:
geneIDGene ID, e.g. "ampk_ACACA"
ncbiIDTaxonomy ID of the search species, e.g. "ncbi284812"
orthoIDOrtholog ID, e.g. "ampk_ACACA|SCHPO@284812@1|P78820|1"
FAS_FForward FAS score, e.g. "0.9884601"
FAS_BBackward FAS score, e.g. "0.9907436"
trvinh/PhyloProfileData documentation built on June 6, 2019, 8:36 p.m.
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Description
Data frame contains the phylogenetic profiles of 147 proteins of the human AMPK-TOR pathway across 83 species in the three domains of life. This data is part of the published study https://doi.org/10.1093/jxb/erw211.
Usage
1 |
Format
A data frame with 5 columns and 6535 rows:
geneIDGene ID, e.g. "ampk_ACACA"
ncbiIDTaxonomy ID of the search species, e.g. "ncbi284812"
orthoIDOrtholog ID, e.g. "ampk_ACACA|SCHPO@284812@1|P78820|1"
FAS_FForward FAS score, e.g. "0.9884601"
FAS_BBackward FAS score, e.g. "0.9907436"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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