returnRPKM: RPKM Normalization
In tgirke/systemPipeR: systemPipeR: Workflow Environment for Data Analysis and Report Generation
returnRPKM R Documentation
RPKM Normalization
Description
Converts read counts to RPKM normalized values.
Usage
returnRPKM(counts, ranges)
Arguments
counts
Count data frame, e.g. from an RNA-Seq experiment.
ranges
GRangesList object, e.g. generated by exonsBy(txdb, by="gene").
Value
data.frame
Author(s)
Thomas Girke
Examples
## Not run:
countDFrpkm <- apply(countDF, 2, function(x) returnRPKM(counts=x, gffsub=eByg))
## End(Not run)
tgirke/systemPipeR documentation built on Sept. 24, 2024, 9:48 a.m.
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| returnRPKM | R Documentation |
RPKM Normalization
Description
Converts read counts to RPKM normalized values.
Usage
returnRPKM(counts, ranges)
Arguments
counts |
Count data frame, e.g. from an RNA-Seq experiment. |
ranges |
|
Value
data.frame
Author(s)
Thomas Girke
Examples
## Not run:
countDFrpkm <- apply(countDF, 2, function(x) returnRPKM(counts=x, gffsub=eByg))
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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