Files in systemPipeR/systemPipeShiny
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization
..Rproj
.Rbuildignore
.Rprofile
.github/bash/update_man.sh
.github/reference_hash/man_hash.txt
.github/workflows/R-CMD-check.yml
.github/workflows/update_man.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/canvas.R
R/load_guide.R
R/overwrite_core_tabs.R
R/page_admin.R
R/page_admin_login.R
R/page_user.R
R/page_user_login.R
R/parse_notification.R
R/plotWF.R
R/run_DESeq2.R
R/spsClasses.R
R/spsCore.R
R/spsCoreServer.R
R/spsCoreUI.R
R/spsLoading.R
R/spsNewtab.R
R/spsPlugin.R
R/spsServerCollections.R
R/spsUIcollections.R
R/spsUti.R
R/subsetRmd.R
R/tab_admin_info.R
R/tab_admin_users.R
R/tab_core_about.R
R/tab_core_canvas.R
R/tab_core_right.R
R/tab_core_top.R
R/tab_core_welcome.R
R/tab_module_main.R
R/tab_vs_esq.R
R/tab_vs_main.R
R/tab_vs_rnaseq.R
R/tab_vs_rnaseq_data.R
R/tab_vs_rnaseq_deg.R
R/tab_vs_rnaseq_normal.R
R/tab_vs_rnaseq_plots.R
R/tab_wf.R
R/tab_wf_cwl.R
R/tab_wf_run.R
R/tab_wf_setup.R
R/tab_wf_target.R
R/tab_wf_wf.R
R/tab_wf_wf_bk.R
R/tab_wf_wf_helper.R
R/test_admin.R
R/zzz.R
README.md
_pkgdown.yml
docs/authors.html
docs/index.html
docs/news/index.html
docs/reference/Rplot001.png
docs/reference/canvasBtn.html
docs/reference/dynamicFile.html
docs/reference/genGallery.html
docs/reference/genHrefTable.html
docs/reference/index.html
docs/reference/loadDF.html
docs/reference/removeSpsTab.html
docs/reference/sps.html
docs/reference/spsAccount.html
docs/reference/spsCoreTabReplace.html
docs/reference/spsDb.html
docs/reference/spsEncryption.html
docs/reference/spsEzUI.html
docs/reference/spsInit.html
docs/reference/spsNewTab.html
docs/reference/spsOptDefaults.html
docs/reference/spsTabInfo.html
index.md
inst/CITATION
inst/app/R/README.md
inst/app/R/guide_content.R
inst/app/R/tab_vs_example.R
inst/app/README.md
inst/app/app_ez/global.R
inst/app/app_ez/server.R
inst/app/app_ez/ui.R
inst/app/bash/get_cpu.sh
inst/app/config/README.md
inst/app/config/sps_options.yaml
inst/app/config/tabs.csv
inst/app/data/README.md
inst/app/data/hisat2.cwl
inst/app/data/hisat2.yml
inst/app/data/iris.csv
inst/app/data/rna_raw_count.tsv
inst/app/data/targets.txt
inst/app/data/targetsPE.txt
inst/app/deploy.R
inst/app/results/README.md
inst/app/templates/data_tab_template.R
inst/app/templates/data_tab_template_empty.R
inst/app/templates/plot_tab_template.R
inst/app/templates/plot_tab_template_empty.R
inst/app/templates/spr_simple_wf.Rmd
inst/app/templates/tab_template_ez.R
inst/app/templates/tab_template_full.R
inst/app/templates/targets_gunzip.txt
inst/app/www/css/sps.css
inst/app/www/css/sps_admin.css
inst/app/www/css/sps_esq.css
inst/app/www/css/sps_login.css
inst/app/www/css/sps_rnaseq.css
inst/app/www/css/sps_welcome.css
inst/app/www/css/sps_wf.css
inst/app/www/css/sps_wf_wf.css
inst/app/www/img/Untitled.svg
inst/app/www/img/chipseq.png
inst/app/www/img/cwl.png
inst/app/www/img/drawer.png
inst/app/www/img/empty.png
inst/app/www/img/example.png
inst/app/www/img/exist.png
inst/app/www/img/ggplot.png
inst/app/www/img/logo.png
inst/app/www/img/noimg.png
inst/app/www/img/riboseq.png
inst/app/www/img/rnaseq.png
inst/app/www/img/rnaseq_notext.png
inst/app/www/img/spr.png
inst/app/www/img/spr_notext.png
inst/app/www/img/sps-rnaseq.png
inst/app/www/img/sps_small.png
inst/app/www/img/varseq.png
inst/app/www/img/visualization.png
inst/app/www/js/micro.js
inst/app/www/js/split1.6.0.js
inst/app/www/js/sps.js
inst/app/www/js/sps_admin.js
inst/app/www/js/sps_admin_info.js
inst/app/www/js/sps_admin_user.js
inst/app/www/js/sps_esq.js
inst/app/www/js/sps_rnaseq.js
inst/app/www/js/sps_user.js
inst/app/www/js/sps_welcome.js
inst/app/www/js/sps_wf.js
inst/app/www/js/sps_wf_wf.js
inst/app/www/js/sps_wf_wf_sort.js
inst/app/www/js/vanilla-tilt.js
inst/app/www/js/vanilla-tilt.min.js
inst/app/www/loading_themes/LICENSE-particlesjs.md
inst/app/www/loading_themes/biomatrix.html
inst/app/www/loading_themes/double-helix.js
inst/app/www/loading_themes/easeljs.min.js
inst/app/www/loading_themes/empty.html
inst/app/www/loading_themes/hhelix.html
inst/app/www/loading_themes/hhelix.js
inst/app/www/loading_themes/nyan.css
inst/app/www/loading_themes/nyan.html
inst/app/www/loading_themes/particles.min.js
inst/app/www/loading_themes/vhelix.css
inst/app/www/loading_themes/vhelix.html
inst/app/www/plot_list/plot_bar.png
inst/app/www/plot_list/plot_dendro.png
inst/app/www/plot_list/plot_gpca.png
inst/app/www/plot_list/plot_heatmap.png
inst/app/www/plot_list/plot_mds.png
inst/app/www/plot_list/plot_pca.png
inst/app/www/plot_list/plot_point.png
inst/app/www/plot_list/plot_tsne.jpg
inst/app/www/plot_list/plot_tsne.png
inst/depend/use_pkg.R
inst/remote_resource/notifications.yaml
inst/remote_resource/notifications_internal.yaml
man/canvasBtn.Rd
man/dynamicFile.Rd
man/genGallery.Rd
man/genHrefTable.Rd
man/loadDF.Rd
man/removeSpsTab.Rd
man/sps.Rd
man/spsAccount.Rd
man/spsCoreTabReplace.Rd
man/spsDb.Rd
man/spsEncryption.Rd
man/spsEzUI.Rd
man/spsInit.Rd
man/spsNewTab.Rd
man/spsOptDefaults.Rd
man/spsTabInfo.Rd
tests/testthat.R
tests/testthat/_snaps/04imports.md
tests/testthat/test-01sps_core.R
tests/testthat/test-02interactive_funcs.R
tests/testthat/test-03sps_tabs.R
tests/testthat/test-04imports.R
vignettes/bibtex.bib
vignettes/img/app_start.png
vignettes/img/resize_icon.png
vignettes/img/sps_canvas.jpg
vignettes/img/sps_quickgg.jpg
vignettes/img/sps_rna_data.jpg
vignettes/img/sps_rna_deg.jpg
vignettes/img/sps_rna_norm.jpg
vignettes/img/sps_rna_plot.jpg
vignettes/img/sps_structure.png
vignettes/img/sps_ui_config.png
vignettes/img/sps_ui_main.jpg
vignettes/img/sps_ui_target.jpg
vignettes/img/sub_step_icon.png
vignettes/systemPipeShiny.Rmd
