Files in stela2502/Rscexv

The backend for the SCExV (single cell expression view) server.

R/Class_01_class.R R/FACS.heatmap.R R/FileLocks.R R/PCR.heatmap.R R/Rscexv.R R/SingleCellAssay_Pvalues.R R/analyse.data.R R/beanplot.R R/beanplot.fixcolorvector.R R/beanplot.getgroupsfromarguments.R R/beanplot.makecombinedname.R R/beanplot.seemslog.R R/beanplotbeanlines.R R/beanplotinnerborders.R R/beanplotpolyshapes.R R/beanplotscatters.R R/bestGrouping.R R/boot_p_value.R R/calc.lin.lang.4_list.R R/check.dataObj.R R/checkGrouping.R R/clusters.R R/coexpressGenes.R R/coexpressionMatrix.R R/col4bean.R R/colors_4.R R/complexHeatmap.R R/createDataObj.R R/createRFgrouping_samples.R R/create_p_values.R R/difference.R R/exportGroups.R R/filter.on.controls.no.inv.R R/force.unique.sample.R R/group_1D.R R/group_1D_worker.R R/group_on_strings.R R/heatmap.3.R R/identifyBestGrouping.R R/implyCloseOrder.R R/kick.expressed.negContr.samples.R R/match.sample.names.R R/mds.and.clus.R R/mergeComplexSampleGroupings.R R/mergeSampleGroupings.R R/norm.PCR.R R/p.lin.lang.R R/plot.beans.R R/plot.histograms.R R/plot.legend.R R/plot.violines.R R/plotDensity.R R/plotcoma.R R/plug.999.R R/predict.rf.R R/pwd.R R/qualityTest.R R/quality_of_fit.R R/read.FACS.R R/read.FACS.set.R R/read.PCR.R R/read.PCR.heatmap.R R/read.PCR.set.R R/regroup.R R/remove.FACS.genes.R R/remove.genes.R R/remove.samples.R R/reorder.genes.R R/reorder.samples.R R/rfCluster.R R/saveObj.R R/scale.FACS.data.R R/sd.filter.R R/show.R R/this_color.R R/vioplot.R R/write.stats.R R/z.score.PCR.mad.R README.md install.R man/FACS.heatmap-methods.Rd man/InbuiltData.Rd man/PCR.heatmap-methods.Rd man/Rscexv-methods.Rd man/Rscexv.Rd man/SingleCellAssay_Pvalues-methods.Rd man/analyse.data-methods.Rd man/analyzed.Rd man/bestGrouping.Rd man/boot_p_value-methods.Rd man/calc.lin.lang.4_list-methods.Rd man/check.dataObj-methods.Rd man/checkGrouping-methods.Rd man/clusters-methods.Rd man/coexpressGenes-methods.Rd man/coexpressionMatrix-methods.Rd man/col4bean-methods.Rd man/colors_4-methods.Rd man/complexHeatmap-methods.Rd man/createDataObj-methods.Rd man/createRFgrouping_samples-methods.Rd man/create_p_values-methods.Rd man/difference-methods.Rd man/exportGroups-methods.Rd man/filter.on.controls.no.inv-methods.Rd man/force.unique.sample-methods.Rd man/group_1D-methods.Rd man/group_1D_worker-methods.Rd man/group_on_strings-methods.Rd man/identifyBestGrouping-methods.Rd man/implyCloseOrder-methods.Rd man/kick.expressed.negContr.samples-methods.Rd man/locked-methods.Rd man/match.sample.names-methods.Rd man/mds.and.clus-methods.Rd man/mergeComplexSampleGroupings-methods.Rd man/mergeSampleGroupings-methods.Rd man/norm.PCR-methods.Rd man/p.lin.lang-methods.Rd man/plot.beans-methods.Rd man/plot.histograms-methods.Rd man/plot.legend-methods.Rd man/plot.violines-methods.Rd man/plotDensity-methods.Rd man/plotcoma-methods.Rd man/plug.999-methods.Rd man/predict.rf.Rd man/pwd-methods.Rd man/qualityTest-methods.Rd man/quality_of_fit-methods.Rd man/read.FACS-methods.Rd man/read.FACS.set-methods.Rd man/read.PCR-methods.Rd man/read.PCR.heatmap-methods.Rd man/read.PCR.set-methods.Rd man/regroup-methods.Rd man/release.lock-methods.Rd man/remove.FACS.genes-methods.Rd man/remove.genes-methods.Rd man/remove.samples-methods.Rd man/reorder.genes-methods.Rd man/reorder.samples-methods.Rd man/rfCluster.Rd man/saveObj-methods.Rd man/scale.FACS.data-methods.Rd man/sd.filter-methods.Rd man/set.lock-methods.Rd man/show-methods.Rd man/this.color-methods.Rd man/vioplot-methods.Rd man/write.stats-methods.Rd man/z.score.PCR.mad-methods.Rd tests/testthat.R tests/testthat/test.1.0Rscexv.r tests/testthat/test.1.1Grouping.r tests/testthat/test.1.2.Pvalues.r tests/testthat/test.2.0Rscexv_no_FACS.r tests/testthat/test.export.r todo/Tool_Coexpression.R todo/Tool_RandomForest.R todo/Tool_grouping.R todo/source_Tool_Pipe.R todo/source_Tool_Plot.R