complexHeatmap-methods: description of function plot.beans

In stela2502/Rscexv: The backend for the SCExV (single cell expression view) server.

description of function plot.beans

Description

plot the PCR heatmap using the heatmap.3 function included in this package

Usage

complexHeatmap(
  x,
  ofile = NULL,
  colGroups = NULL,
  rowGroups = NULL,
  colColors = NULL,
  rowColors = NULL,
  pdf = FALSE,
  subpath = "",
  main = "",
  heapmapCols = function(x) {
     c("darkgrey", bluered(x))
 }
)

Arguments

x	the Rscexv object
ofile	the outfile to create in the x@outpath folder
colGroups	columns in the samples table to use to order the data (first == order)
rowGroups	rows in the annotation table to use to color the heatmap rows (first == order)
colColors	a named list of column color vectors
rowColors	a named list of row color vectors
pdf	export as pdf (default = FALSE)
subpath	the subpath for the plots (default = ”)
heapmapCols	the color function to calculate the heatmap colours ( default function (x) c("darkgrey",bluered(x)) )

stela2502/Rscexv documentation built on July 6, 2022, 9:02 p.m.