duprateExpIdentify: Identify genes plotted by 'duprateExpPlot'

In ssayols/dupRadar: Assessment of duplication rates in RNA-Seq datasets

Identify genes plotted by duprateExpPlot

Description

duprateExpIdentify Identify genes plotted by duprateExpPlot

Usage

duprateExpIdentify(DupMat, idCol = "ID")

Arguments

DupMat	The duplication matrix calculated by analyzeDuprates
idCol	The column from the duplication matrix containing the labels

Details

This function makes a barplot showing the cumulative read counts fraction from the duplication matrix calculated by analyzeDuprates.

Value

The identified points. x and y values match the ones from duprateExpPlot

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot and identify genes
duprateExpPlot(DupMat=dm)
duprateExpIdentify(DupMat=dm)

ssayols/dupRadar documentation built on Oct. 30, 2024, 4:42 a.m.