duprateExpBoxplot: Duplication rate ~ total reads per kilobase (RPK) boxplot

In ssayols/dupRadar: Assessment of duplication rates in RNA-Seq datasets

Duplication rate ~ total reads per kilobase (RPK) boxplot

Description

duprateExpBoxplot Duplication rate ~ total reads per kilobase (RPK) boxplot

Usage

duprateExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat	The duplication matrix calculated by analyzeDuprates
stepSize	Expression bin seze for the boxplot
...	Other params sent to boxplot

Details

This function makes a boxplot showing the distribution of per gene duplication rate versus the reads per kilobase (RPK) inside gene expression bins.

Value

nothing

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# duprate boxplot
duprateExpBoxplot(DupMat=dm)

ssayols/dupRadar documentation built on Oct. 30, 2024, 4:42 a.m.