example_ame: Example runAme() output

In snystrom/dremeR: motif matching, comparison, and de novo discovery using the MEME Suite

Example runAme() output

Description

Result when running AME using 100bp window around 'example_chip_summits' for "Increasing" and "Decreasing" sites, using "Static" as background.

Usage

example_ame

Format

A list object of AME results data.frames

Increasing

'runAme()' Results object for Increasing sites vs Static sites

Decreasing

'runAme()' Results object for Decreasing sites vs Static sites

Examples

# Data can be combined into 1 large data.frame using:
# where the "behavior" column will hold the "Increasing"/"Decreasing" information
dplyr::bind_rows(example_ame, .id = "behavior")

snystrom/dremeR documentation built on Oct. 13, 2024, 10:48 p.m.