ame_compare_heatmap_methods: Compare AME heatmap methods

In snystrom/dremeR: motif matching, comparison, and de novo discovery using the MEME Suite

Compare AME heatmap methods

Description

This helper function allows the user to visualize the distribution of their AME results data on different scales to help understand the implications of using different values in 'plot_ame_heatmap()'

Usage

ame_compare_heatmap_methods(ame, group, value = -log10(adj.pvalue))

Arguments

ame	ame results data.frame
group	optional name of group to split results by
value	value to compare to "normalize" method (default: -log10(adj.pvalue))

Value

a cowplot 2 panel plot comparing the distribution of 'value' to normalized rank values

Examples

data("example_ame", package = "memes")
ame_compare_heatmap_methods(example_ame$Decreasing)

ame_compare_heatmap_methods(dplyr::bind_rows(example_ame, .id = "type"), type)

snystrom/dremeR documentation built on Oct. 13, 2024, 10:48 p.m.