findMsMsHR.direct: Discontinued: find MS/MS spectrum from open raw file

In sneumann/RMassBank: Workflow to process tandem MS files and build MassBank records

Description

This interface has been discontinued. findMsMsHR now supports the same parameters (use named parameters).

Usage

findMsMsHR.direct(
  msRaw,
  cpdID,
  mode = "pH",
  confirmMode = 0,
  useRtLimit = TRUE,
  ppmFine = getOption("RMassBank")$findMsMsRawSettings$ppmFine,
  mzCoarse = getOption("RMassBank")$findMsMsRawSettings$mzCoarse,
  fillPrecursorScan = getOption("RMassBank")$findMsMsRawSettings$fillPrecursorScan,
  rtMargin = getOption("RMassBank")$rtMargin,
  deprofile = getOption("RMassBank")$deprofile,
  headerCache = NULL
)

Arguments

msRaw	x
cpdID	x
mode	x
confirmMode	x
useRtLimit	x
ppmFine	x
mzCoarse	x
fillPrecursorScan	x
rtMargin	x
deprofile	x
headerCache	x

Value

an error

Author(s)

stravsmi

sneumann/RMassBank documentation built on Oct. 20, 2020, 3:19 p.m.