readCollection: Given a bunch of region set files, read in all those flat...
In sheffien/LOLA: Locus overlap analysis for enrichment of genomic ranges
Description
Usage
Arguments
Value
Examples
Description
Given a bunch of region set files, read in all those flat (bed) files and
create a GRangesList object holding all the region sets. This function is
used by readRegionGRL to process annotation objects.
Usage
1
readCollection(filesToRead, limit = NULL)
Arguments
filesToRead
a vector containing bed files
limit
for testing purposes, limit the number of files read.
NULL for no limit (default).
Value
A GRangesList with the GRanges in the filesToRead.
Examples
1
2
3
files = list.files(system.file("extdata", "hg19/ucsc_example/regions",
package="LOLA"), pattern="*.bed")
regionAnno = readCollection(files)
sheffien/LOLA documentation built on Sept. 3, 2020, 8:29 p.m.
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Description Usage Arguments Value Examples
Description
Given a bunch of region set files, read in all those flat (bed) files and create a GRangesList object holding all the region sets. This function is used by readRegionGRL to process annotation objects.
Usage
1 | readCollection(filesToRead, limit = NULL)
|
Arguments
filesToRead |
a vector containing bed files |
limit |
for testing purposes, limit the number of files read. NULL for no limit (default). |
Value
A GRangesList with the GRanges in the filesToRead.
Examples
1 2 3 | files = list.files(system.file("extdata", "hg19/ucsc_example/regions",
package="LOLA"), pattern="*.bed")
regionAnno = readCollection(files)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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