checkUniverseAppropriateness: Check universe appropriateness

In sheffien/LOLA: Locus overlap analysis for enrichment of genomic ranges

Description

Checks to see if the universe is appropriate for the userSets Anything in the userSets should be present in the universe. In addition, 2 different regions in the userSets should not overlap the same region in the universe

Usage

checkUniverseAppropriateness(userSets, userUniverse, cores = 1, fast = FALSE)

Arguments

userSets	Regions of interest
userUniverse	Regions tested for inclusion in userSets
cores	Number of processors
fast	Skip the (slow) test for many-to-many relationships

Value

No return value.

Examples

data("sample_input", package="LOLA") # load userSet
data("sample_universe", package="LOLA") # load userUniverse
checkUniverseAppropriateness(userSets, userUniverse)

sheffien/LOLA documentation built on Sept. 3, 2020, 8:29 p.m.