weightMatrix-set: Setter functions for scHOT objects
In shazanfar/scHOT: single-cell higher order testing

weightMatrix<-

R Documentation

Setter functions for scHOT objects

Description

Setter functions for scHOT objects

Usage

weightMatrix(x) <- value

Arguments

`x`	A scHOT object
`value`	The value the slot should take

Value

A scHOT object

Examples


library(SingleCellExperiment)

data(MOB_subset)
sce_MOB_subset <- MOB_subset$sce_MOB_subset
scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset,
assayName = "logcounts",
positionType = "spatial",
positionColData = c("x", "y"))

W <- spatialWeightMatrix(colData(scHOT_spatial)[,slot(scHOT_spatial, "positionColData")])

weightMatrix(scHOT_spatial) <- W

shazanfar/scHOT documentation built on June 29, 2023, 5:29 p.m.