testingScaffold-set: Setter functions for scHOT objects

In shazanfar/scHOT: single-cell higher order testing

Setter functions for scHOT objects

Description

Setter functions for scHOT objects

Usage

testingScaffold(x) <- value

Arguments

x	A scHOT object
value	The value the slot should take

Value

A scHOT object

Examples

data(MOB_subset)
sce_MOB_subset <- MOB_subset$sce_MOB_subset
scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset,
assayName = "logcounts",
positionType = "spatial",
positionColData = c("x", "y"))

pairs <- t(combn(rownames(sce_MOB_subset),2))
rownames(pairs) <- apply(pairs,1,paste0,collapse = "_")

testingScaffold(scHOT_spatial) <- pairs

shazanfar/scHOT documentation built on June 29, 2023, 5:29 p.m.