Files in shazanfar/scHOT
single-cell higher order testing
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/build.R
R/data.R
R/higherOrderFunctions.R
R/scHOT.R
R/scHOT_class.R
R/scHOT_functions.R
R/scHOT_plot.R
README.md
_pkgdown.yml
data/MOB_subset.rda
data/liver.rda
docs/404.html
docs/articles/index.html
docs/articles/scHOT.html
docs/articles/scHOT_files/figure-html/unnamed-chunk-10-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-10-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-11-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-11-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-17-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-22-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-27-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-27-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-28-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-28-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-3-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-3-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-31-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-31-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-4-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-4-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-5-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-5-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-6-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-7-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-8-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-8-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-9-1.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-9-2.png
docs/articles/scHOT_files/figure-html/unnamed-chunk-9-3.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/MOB_subset.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/figures/scHOT_hex.png
docs/reference/index.html
docs/reference/liver.html
docs/reference/params-set.html
docs/reference/plotColouredExpression-1.png
docs/reference/plotColouredExpression.html
docs/reference/plotEgoNetwork.html
docs/reference/plotHigherOrderSequence-1.png
docs/reference/plotHigherOrderSequence-2.png
docs/reference/plotHigherOrderSequence.html
docs/reference/plotOrderedExpression.html
docs/reference/positionColData-set.html
docs/reference/positionType-set.html
docs/reference/scHOT-class.html
docs/reference/scHOT.html
docs/reference/scHOT_addTestingScaffold.html
docs/reference/scHOT_buildFromMatrix.html
docs/reference/scHOT_buildFromSCE.html
docs/reference/scHOT_calculateGlobalHigherOrderFunction.html
docs/reference/scHOT_calculateHigherOrderTestStatistics.html
docs/reference/scHOT_estimatePvalues.html
docs/reference/scHOT_output-set.html
docs/reference/scHOT_performPermutationTest.html
docs/reference/scHOT_plotPermutationDistributions.html
docs/reference/scHOT_setPermutationScaffold.html
docs/reference/scHOT_setWeightMatrix.html
docs/reference/scHOT_stripOutput.html
docs/reference/spatialWeightMatrix.html
docs/reference/testingScaffold-set.html
docs/reference/thin.html
docs/reference/trajectoryWeightMatrix.html
docs/reference/weightMatrix-set.html
docs/reference/weightedPearson.html
docs/reference/weightedSpearman.html
docs/reference/weightedVariance.html
docs/reference/weightedZIKendall.html
docs/reference/weightedZISpearman.html
docs/sitemap.xml
man/MOB_subset.Rd
man/figures/scHOT_hex.png
man/liver.Rd
man/params-set.Rd
man/plotColouredExpression.Rd
man/plotEgoNetwork.Rd
man/plotHigherOrderSequence.Rd
man/plotOrderedExpression.Rd
man/positionColData-set.Rd
man/positionType-set.Rd
man/scHOT-class.Rd
man/scHOT.Rd
man/scHOT_addTestingScaffold.Rd
man/scHOT_buildFromMatrix.Rd
man/scHOT_buildFromSCE.Rd
man/scHOT_calculateGlobalHigherOrderFunction.Rd
man/scHOT_calculateHigherOrderTestStatistics.Rd
man/scHOT_estimatePvalues.Rd
man/scHOT_output-set.Rd
man/scHOT_performPermutationTest.Rd
man/scHOT_plotPermutationDistributions.Rd
man/scHOT_setPermutationScaffold.Rd
man/scHOT_setWeightMatrix.Rd
man/scHOT_stripOutput.Rd
man/spatialWeightMatrix.Rd
man/testingScaffold-set.Rd
man/thin.Rd
man/trajectoryWeightMatrix.Rd
man/weightMatrix-set.Rd
man/weightedPearson.Rd
man/weightedSpearman.Rd
man/weightedVariance.Rd
man/weightedZIKendall.Rd
man/weightedZISpearman.Rd
vignettes/scHOT.Rmd
