clean_granges: Clean GRanges
In serachoi1230/EpiCompare: Comparison, Benchmarking & QC of Epigenomic Datasets
View source: R/clean_granges.R
clean_granges R Documentation
Clean GRanges
Description
Remove columns from the metadata (GenomicRanges::mcols) that
conflicts with GRanges conventions.
Usage
clean_granges(
gr,
nono_cols = c("seqnames", "ranges", "strand", "seqlevels", "seqlengths", "isCircular",
"start", "end", "width", "element")
)
Arguments
gr
A GRanges object.
nono_cols
Problematic columns to search for and remove (if present).
Value
Cleaned GRanges object.
serachoi1230/EpiCompare documentation built on Jan. 30, 2024, 11:37 a.m.
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View source: R/clean_granges.R
| clean_granges | R Documentation |
Clean GRanges
Description
Remove columns from the metadata (GenomicRanges::mcols) that
conflicts with GRanges conventions.
Usage
clean_granges(
gr,
nono_cols = c("seqnames", "ranges", "strand", "seqlevels", "seqlengths", "isCircular",
"start", "end", "width", "element")
)
Arguments
gr |
A GRanges object. |
nono_cols |
Problematic columns to search for and remove (if present). |
Value
Cleaned GRanges object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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