cov_glue_snp_lineage: COVID GLUE snp to lineage and taxon map

In seandavi/sars2pack: COVID-19 data resources and analysis tools

COVID GLUE snp to lineage and taxon map

Description

This function maps lineage name to snps and to taxon names. Everything is GISAID-specific.

Usage

cov_glue_snp_lineage()

Value

a data.frame

References

• https://www.biorxiv.org/content/10.1101/2020.04.17.046086v1

See Also

cov_glue_lineage_data(), cov_glue_newick_data()

Other lineage: cov_glue_lineage_data(), cov_glue_newick_data()

Other data-import: acaps_government_measures_data(), acaps_secondary_impact_data(), apple_mobility_data(), beoutbreakprepared_data(), cci_us_vaccine_data(), cdc_aggregated_projections(), cdc_excess_deaths(), cdc_social_vulnerability_index(), coronadatascraper_data(), coronanet_government_response_data(), cov_glue_lineage_data(), cov_glue_newick_data(), covidtracker_data(), descartes_mobility_data(), ecdc_data(), econ_tracker_consumer_spending, econ_tracker_employment, econ_tracker_unemp_data, economist_excess_deaths(), financial_times_excess_deaths(), google_mobility_data(), government_policy_timeline(), jhu_data(), jhu_us_data(), kff_icu_beds(), nytimes_county_data(), oecd_unemployment_data(), owid_data(), param_estimates_published(), test_and_trace_data(), us_county_geo_details(), us_county_health_rankings(), us_healthcare_capacity(), us_hospital_details(), us_state_distancing_policy(), usa_facts_data(), who_cases()

Examples

res = cov_glue_snp_lineage()
res
colnames(res)
dplyr::glimpse(res)

seandavi/sars2pack documentation built on May 13, 2022, 3:41 p.m.