getSRAdbFile: Download and unzip last version of SRAmetadb.sqlite.gz from...
In seandavi/SRAdb: A compilation of metadata from NCBI SRA and tools
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function is the standard method for downloading and unzipping the
most recent SRAmetadb SQLite file from the server.
Usage
1
2
getSRAdbFile(destdir = getwd(), destfile = "SRAmetadb.sqlite.gz",
method)
Arguments
destdir
The destination directory of the downloaded file
destfile
The filename of the downloaded file. This filename
should end in ".gz" as the unzipping assumes that is the case
method
Character vector of length 1, passed to the identically
named argument of download.file.
Value
Prints some diagnostic information to the screen.
Returns the local filename for use later.
Author(s)
Jack Zhu <zhujack@mail.nih.gov>, Sean Davis <sdavis2@mail.nih.gov>
Examples
1
## Not run: geometadbfile <- getSRAdbFile()
seandavi/SRAdb documentation built on May 29, 2019, 4:33 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
This function is the standard method for downloading and unzipping the most recent SRAmetadb SQLite file from the server.
Usage
1 2 | getSRAdbFile(destdir = getwd(), destfile = "SRAmetadb.sqlite.gz",
method)
|
Arguments
destdir |
The destination directory of the downloaded file |
destfile |
The filename of the downloaded file. This filename should end in ".gz" as the unzipping assumes that is the case |
method |
Character vector of length 1, passed to the identically
named argument of |
Value
Prints some diagnostic information to the screen.
Returns the local filename for use later.
Author(s)
Jack Zhu <zhujack@mail.nih.gov>, Sean Davis <sdavis2@mail.nih.gov>
Examples
1 | ## Not run: geometadbfile <- getSRAdbFile()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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