IGVsort: Sort an alignment track by the specified option.

In seandavi/SRAdb: A compilation of metadata from NCBI SRA and tools

Description

Using the remote command port of IGV, Sorts an alignment track by the specified option. Recognized values for the option parameter are: base, position, strand, quality, sample, and readGroup.

Usage

IGVsort(sock, option)

Arguments

sock	A socket connection to IGV.
option	Recognized values for the option parameter are: base, position, strand, quality, sample, and readGroup.

Author(s)

Jack Zhu<[e-mail]>

References

http://www.broadinstitute.org/igv/PortCommands

See Also

startIGV, IGVload

Examples

  ## Not run: 
  sock <- IGVsocket()
  IGVsort(sock, 'position')
  IGVsort(sock, 'base')
  IGVsort(sock, 'sample')
  
## End(Not run)

seandavi/SRAdb documentation built on May 29, 2019, 4:33 p.m.