getGSEDataTables: Get GSE data tables from GEO into R data structures.
In seandavi/GEOquery: Get data from NCBI Gene Expression Omnibus (GEO)
View source: R/getGSEDataTables.R
getGSEDataTables R Documentation
Get GSE data tables from GEO into R data structures.
Description
In some cases, instead of individual sample records (GSM) containing
information regarding sample phenotypes, the GEO Series contains that
information in an attached data table. And example is given by GSE3494
where there are two data tables with important information contained within
them. Using getGEO with the standard parameters downloads the GSEMatrix
file which, unfortunately, does not contain the information in the data
tables. This function simply downloads the “header” information from the
GSE record and parses out the data tables into R data.frames.
Usage
getGSEDataTables(GSE)
Arguments
GSE
The GSE identifier, such as “GSE3494”.
Value
A list of data.frames.
Author(s)
Sean Davis sdavis2@mail.nih.gov
See Also
getGEO
Examples
dfl = getGSEDataTables('GSE3494')
lapply(dfl,head)
seandavi/GEOquery documentation built on Oct. 29, 2024, 1:24 p.m.
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View source: R/getGSEDataTables.R
| getGSEDataTables | R Documentation |
Get GSE data tables from GEO into R data structures.
Description
In some cases, instead of individual sample records (GSM) containing information regarding sample phenotypes, the GEO Series contains that information in an attached data table. And example is given by GSE3494 where there are two data tables with important information contained within them. Using getGEO with the standard parameters downloads the GSEMatrix file which, unfortunately, does not contain the information in the data tables. This function simply downloads the “header” information from the GSE record and parses out the data tables into R data.frames.
Usage
getGSEDataTables(GSE)
Arguments
GSE |
The GSE identifier, such as “GSE3494”. |
Value
A list of data.frames.
Author(s)
Sean Davis sdavis2@mail.nih.gov
See Also
getGEO
Examples
dfl = getGSEDataTables('GSE3494')
lapply(dfl,head)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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