sbg/sevenbridges-r
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

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Search the sbg/sevenbridges-r package
Vignettes
Functions
429
Source code
43
Man pages
68
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sbg/sevenbridges-r: Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R
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API

API for sbg/sevenbridges-r
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

Global functions
"%>>%" Man page
"%>>%",App,App-method Man page
"%>>%",Tool,Tool-method Man page
"%>>%",Workflow,App-method Man page
"%>>%",Workflow,Tool-method Man page
"%>>%",Workflow,Workflow-method Man page
"+",App,App-method Man page
"+",Tool,Tool-method Man page
"+",WorkflowStepList,App-method Man page
"+",WorkflowStepList,Tool-method Man page
"+",WorkflowStepList,WorkflowStepList-method Man page
%>>% Man page
%>>%,App,App-method Man page
%>>%,Tool,Tool-method Man page
%>>%,Workflow,App-method Man page
%>>%,Workflow,Tool-method Man page
%>>%,Workflow,Workflow-method Man page
+,App,App-method Man page
+,Tool,Tool-method Man page
+,WorkflowStepList,App-method Man page
+,WorkflowStepList,Tool-method Man page
+,WorkflowStepList,WorkflowStepList-method Man page
.addIdNum Source code
.asApp Source code
.asAppList Source code
.asBilling Source code
.asBillingList Source code
.asDivision Source code
.asDivisionList Source code
.asFiles Source code
.asFilesList Source code
.asFlow Source code
.asMarker Source code
.asMarkerList Source code
.asMember Source code
.asMemberList Source code
.asProject Source code
.asProjectList Source code
.asRate Source code
.asTask Source code
.asTaskList Source code
.asTeam Source code
.asTeamList Source code
.asTeamMember Source code
.asTeamMemberList Source code
.asTool Source code
.asUpload Source code
.asUploadList Source code
.asUser Source code
.asVolume Source code
.asVolumeList Source code
.convert_app Source code
.docker_env_vars Source code
.dotargsAsList Source code
.flowsummary Source code
.format_type Source code
.getFields Source code
.id_only Source code
.is_required Source code
.make_type Source code
.onLoad Source code
.ostype Source code
.read_ini Source code
.set_container_name Source code
.showFields Source code
.showList Source code
.test_docker_setup Source code
.update_list Source code
.update_revision Source code
.ver Source code
.write_ini Source code
AWSInstanceTypeRequirement Man page
AWSInstanceTypeRequirement-class Man page
AnyRequirement Man page
AnyRequirement-class Man page
App Man page
App-class Man page
Auth Man page
Auth-class Man page
Binding Man page
Binding-class Man page
CCBList Man page
CLB Man page
COB Man page
CPURequirement Man page
CPURequirement-class Man page
CWL Man page
CWL-class Man page
CommandInputParameter Man page
CommandInputParameter-class Man page
CommandInputSchema Man page
CommandInputSchema-class Man page
CommandLineBinding Man page
CommandLineBinding-class Man page
CommandLineTool Man page
CommandLineTool-class Man page
CommandOutputBinding Man page
CommandOutputBinding-class Man page
CommandOutputParameter Man page
CommandOutputParameter-class Man page
CommandOutputSchema Man page
CommandOutputSchema-class Man page
ComplexEnum Man page
ComplexSingleEnum-class Man page
CreateFileRequirement Man page
CreateFileRequirement-class Man page
DSCList Man page
DSCList-class Man page
DatatypeEnum Man page
DatatypeSingleEnum-class Man page
DockerRequirement Man page
DockerRequirement-class Man page
EnvVarRequirement Man page
EnvVarRequirement-class Man page
EnvironmentDef Man page
EnvironmentDef-class Man page
EnvironmentDefList Man page
EnvironmentDefList-class Man page
Expression Man page
Expression-class Man page
ExpressionEngineRequirement Man page
ExpressionEngineRequirement-class Man page
ExpressionTool Man page
ExpressionTool-class Man page
FS Man page
FS-class Man page
File Man page
File-class Man page
FileDef Man page
FileDef-class Man page
FileDefList Man page
FileDefList-class Man page
FileList Man page
FileList-class Man page
Files Man page
Files-class Man page
FilesList Man page
FilesList-class Man page
Flow Man page Source code
GET2 Source code
Handler Man page
Handler-class Man page
IPList Man page
InPar Man page
InputParameter Man page
InputParameter-class Man page
InputParameterList Man page
InputParameterList-class Man page
InputSchema Man page
InputSchema-class Man page
Item Man page
Item-class Man page
ItemArray Man page
ItemArray-class Man page
MemRequirement Man page
MemRequirement-class Man page
Metadata Man page
Metadata-class Man page
OPList Man page
OutPar Man page
OutputParameter Man page
OutputParameter-class Man page
OutputParameterList Man page
OutputParameterList-class Man page
OutputSchema Man page
OutputSchema-class Man page
POST2 Source code
Parameter Man page
Parameter-class Man page
PrimitiveEnum Man page
PrimitiveSingleEnum-class Man page
Process Man page
Process-class Man page
ProcessRequirement Man page
ProcessRequirement-class Man page
ProcessRequirementList Man page
ProcessRequirementList-class Man page
SBGWorkflow Man page
SBGWorkflow-class Man page
ScatterFeatureRequirement Man page
ScatterFeatureRequirement-class Man page
ScehmaList Man page
Schema Man page
Schema-class Man page
SchemaDef Man page
SchemaDef-class Man page
SchemaDefList Man page
SchemaDefList-class Man page
SchemaList Man page
SchemaList-class Man page
SevenHandler Source code
SubworkflowFeatureRequirement Man page
SubworkflowFeatureRequirement-class Man page
Tool Man page
Tool-class Man page
Workflow Man page
Workflow-class Man page
WorkflowOutputParameter Man page
WorkflowOutputParameter-class Man page
WorkflowOutputParameterList Man page
WorkflowOutputParameterList-class Man page
WorkflowStep Man page
WorkflowStep-class Man page
WorkflowStepInput Man page
WorkflowStepInput-class Man page
WorkflowStepInputList Man page
WorkflowStepInputList-class Man page
WorkflowStepList Man page
WorkflowStepList-class Man page
WorkflowStepOutput Man page
WorkflowStepOutput-class Man page
WorkflowStepOutputList Man page
WorkflowStepOutputList-class Man page
access_level Man page
addIdNum Man page Source code
add_tag Man page
add_tag,Files-method Man page
add_tag,FilesList-method Man page
age_at_diagnosis Man page
aliquot_id Man page
aliquot_uuid Man page
analysis_uuid Man page
anyReq Man page
api Man page Source code
appType Man page Source code
argslist Man page
asList Man page
asList,ANY-method Man page
asList,CWL-method Man page
asList,DSCList-method Man page
asList,SimpleList-method Man page
asList,SingleEnum-method Man page
aws Man page
batch Man page Source code
build_url2 Source code
case_id Man page
case_uuid Man page
characterORCommandLineBindingList-class Man page
cli_list_projects Man page Source code
cli_list_tags Man page Source code
cli_upload Man page Source code
con_fun Source code
convert_app Man page Source code
cpu Man page
data_format Man page
data_subtype Man page
data_type Man page
days_to_death Man page
deType Source code
de_sharp Source code
delete Man page
delete,Files-method Man page
delete,SimpleList-method Man page
delete,Task-method Man page
disease_type Man page
docker Man page Source code
dockerhubHandler Source code
download Man page
download,Files-method Man page
download,FilesList-method Man page
enum Man page
enum-class Man page
ethnicity Man page
experimental_strategy Man page
fileDef Man page Source code
file_extension Man page
file_segment_number Man page
find_meta_group Source code
format_type Source code
gdc_file_uuid Man page
gender Man page
getFields Source code
getId Source code
getInputId Source code
getInputType Source code
getOutputById Source code
getOutputId Source code
getOutputType Source code
getTaskHook Man page Source code
get_cwl_class Man page Source code
get_id_from_label Source code
get_input_id_from_full Source code
get_input_item Source code
get_nonsbg_item Source code
get_output_item Source code
get_sbg_item Source code
get_step_item Source code
get_stepinputlist_item Source code
get_steplist_item Source code
get_stepoutputlist_item Source code
get_token Man page Source code
get_tool_id_from_full Source code
get_uploader Man page Source code
gitHandler Source code
guess_default Source code
guess_type Source code
handle_url2 Source code
hasItems Source code
input Man page Source code
input_matrix Man page Source code
investigation Man page
is_commandlinetool Man page Source code
is_full_name Source code
is_workflow Man page Source code
isv2 Source code
iterId Source code
library_id Man page
link Man page
link,App,ToolORWorkflow-method Man page
link,Tool,Tool-method Man page
link,Tool,Workflow-method Man page
link,ToolORWorkflow,App-method Man page
link,Workflow,Tool-method Man page
link,Workflow,Workflow-method Man page
link_what Man page
link_what,SBGWorkflow,SBGWorkflow-method Man page
link_what,SBGWorkflow,Tool-method Man page
link_what,Tool,SBGWorkflow-method Man page
link_what,Tool,Tool-method Man page
m.fun Source code
m.match Source code
max_length Source code
mem Man page
message2 Source code
misc_get_token Man page Source code
misc_get_uploader Man page Source code
misc_make_metadata Man page Source code
misc_upload_cli Man page Source code
normalize_url Source code
output Man page Source code
output_matrix Man page Source code
paired_end Man page
parseItem Source code
parseLabel Source code
parse_rmd Source code
platform Man page
platform_unit_id Man page
primary_site Man page
project_details Man page Source code
project_members Man page Source code
ptype Source code
quality_scale Man page
race Man page
reference_genome Man page
regErrFun Source code
requirements Man page Source code
response Man page
response,ANY-method Man page
response,Item-method Man page
response,SimpleList-method Man page
response<- Man page
response<-,ANY-method Man page
response<-,Item-method Man page
response<-,SimpleList-method Man page
sample_id Man page
sample_type Man page
sample_uuid Man page
sbg_get_env Man page Source code
sbg_parse_config Source code
sbg_platform_lookup Source code
sbg_set_env Man page Source code
setAuth Source code
setListClass Man page Source code
setMetaClass Source code
setTaskHook Man page Source code
set_box Source code
set_tag Man page
set_tag,Files-method Man page
set_tag,FilesList-method Man page
set_test_env Man page Source code
sevenbridges-package Man page
sevendockerHandler Source code
status_check Man page Source code
stopifnot_provided Source code
test_tool_bunny Man page Source code
test_tool_cwlrun Man page Source code
test_tool_rabix Man page Source code
upload_complete_all Man page Source code
upload_complete_part Man page Source code
upload_delete Man page Source code
upload_info Man page Source code
upload_info_part Man page Source code
upload_init Man page Source code
v2Check Source code
validateApp Source code
vital_status Man page
sbg/sevenbridges-r documentation built on March 26, 2021, 3:33 p.m.

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