test_tool_cwlrun: Test tools with cwl-runner
In sbg/sevenbridges-r: Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R
Description
Usage
Arguments
Value
Examples
Description
Test tools locally cwl-runner
(https://github.com/common-workflow-language/cwltool)
Usage
1
test_tool_cwlrun(rabix_tool, inputs = list())
Arguments
rabix_tool
rabix tool from Tool class
inputs
input parameters declared as json (or yaml) string
Value
cwl-runner stdout
Examples
1
2
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7
## Not run:
inputs <- '{"counts_file": {"class": "File", "path": "./FPKM.txt"}, "gene_names": "BRCA1"}'
rbx <- <define rabix tool>
set_test_env("tengfei/testenv", "<mount_dir>")
test_tool_cwlrun(rbx, inputs)
## End(Not run)
sbg/sevenbridges-r documentation built on March 26, 2021, 3:33 p.m.
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Description Usage Arguments Value Examples
Description
Test tools locally cwl-runner (https://github.com/common-workflow-language/cwltool)
Usage
1 | test_tool_cwlrun(rabix_tool, inputs = list())
|
Arguments
rabix_tool |
rabix tool from Tool class |
inputs |
input parameters declared as json (or yaml) string |
Value
cwl-runner stdout
Examples
1 2 3 4 5 6 7 | ## Not run:
inputs <- '{"counts_file": {"class": "File", "path": "./FPKM.txt"}, "gene_names": "BRCA1"}'
rbx <- <define rabix tool>
set_test_env("tengfei/testenv", "<mount_dir>")
test_tool_cwlrun(rbx, inputs)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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