loadTargetFile: Load target file
In sarangian/deaRscripts: Differential Expression Analysis based on the read count data generated by either of Salmon, Kallisto, featureCounts and perform statistical analysis to discover quantitative changes in expression levels between two different experimental groups

Load the target file containing sample information

1	loadTargetFile(targetFile, varInt, condRef, batch)

`targetFile`	path to the target file
`varInt`	variable on which sorting the target
`condRef`	reference condition of `varInt`
`batch`	batch effect to take into account

The batch parameter is used only to check if it is available in the target file before running the suite of the script.

A data.frame containing the informations about the samples (name, file containing the counts and biological condition)

Marie-Agnes Dillies and Hugo Varet

sarangian/deaRscripts documentation built on Dec. 12, 2019, 12:48 a.m.

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