exportResults.DESeq2: Export results for DESeq2 analyses
In sarangian/deaRscripts: Differential Expression Analysis based on the read count data generated by either of Salmon, Kallisto, featureCounts and perform statistical analysis to discover quantitative changes in expression levels between two different experimental groups

Export counts and DESeq2 results

1	exportResults.DESeq2(out.DESeq2, group, alpha = 0.05, export = TRUE)

`out.DESeq2`	the result of `run.DESeq2()`
`group`	factor vector of the condition from which each sample belongs
`alpha`	threshold to apply to adjusted p-values
`export`	TRUE to export the results (up, down and complete table) in the tables directory

A list of data.frame containing counts, pvalues, FDR, log2FC...

Marie-Agnes Dillies and Hugo Varet

sarangian/deaRscripts documentation built on Dec. 12, 2019, 12:48 a.m.

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